PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g07290.7
Common NameLR48_Vigan08g041400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 194aa    MW: 21180.7 Da    PI: 9.5362
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g07290.7genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.9e-202473255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a++aa++ ++g
  Vang02g07290.7 24 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDAAARDFRG 73
                    59*******.**********8...557**********************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-142473IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-222482IPR016177DNA-binding domain
CDDcd000186.52E-182483No hitNo description
Gene3DG3DSA:3.30.730.101.3E-322482IPR001471AP2/ERF domain
PROSITE profilePS5103224.3022481IPR001471AP2/ERF domain
SMARTSM003801.2E-362487IPR001471AP2/ERF domain
PRINTSPR003678.3E-122536IPR001471AP2/ERF domain
PRINTSPR003678.3E-124763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAPSDNRSND VCGSNSTRLD KEIRYRGVRK RPWGRYAAEI RDPGKKTRVW LGTFDTAEEA  60
ARAYDAAARD FRGAKAKTNF PTHAELTHVA RSPSQSSTLE SPSPPPPLDL TLTPLAATGA  120
FVFPVARPVV FFDAFARAEV RAFDLPVTAF RRTAVAATTQ SDSDSSSVVD YERVPHRRVL  180
DLDLNVPPPP EVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-202581360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-202181263ATERF1
3gcc_A7e-202181263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493609.11e-107PREDICTED: ethylene-responsive transcription factor 4
SwissprotO803409e-53ERF78_ARATH; Ethylene-responsive transcription factor 4
TrEMBLA0A0L9V3U41e-136A0A0L9V3U4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S9Z01e-136A0A0S3S9Z0_PHAAN; Uncharacterized protein
STRINGGLYMA06G35710.15e-77(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.14e-29ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]